Explain how DNA fingerprinting works.

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Mr. Miller

Biology 401A

Biology Essay

BEGÜM COĞAL

Explain how DNA fingerprinting works.

DNA fingerprinting is a technique used to identify individual organisms based upon the uniqueness of their DNA pattern. No two people (except for identical twins) have exactly the same DNA base sequence. 99% of DNA in all humans is the same. However, the 1% that is highly variable allows scientist to distinguish identity.

The DNA alphabet is made up of four building blocks-A, T, C, and G called base pairs. The order in which these are linked together determine the meaning or function of the genes they code for. However, not our entire DNA contains useful information. A large amount of it is ‘junk’ which is not translated into useful proteins. In the non-coding regions of the genome, sequences of DNA are frequently repeated giving rise to variable number tandem repeats (VNTRs). The number of repeats varies from one person to another and can be used to produce their genetic fingerprint. For example one person might have the bases CCCT repeated four times, while another person may have the same bases repeated seven times. Researchers can determine the number of VNTR repeats in order to come up with an individual’s DNA profile using a method called Restriction Fragment Length Polymorphism (RFLP) analysis.    

The first step is to collect DNA sample. DNA must first be recovered from the cells or tissues of the body in order for the other procedures to take place. Only a small amount of tissue - like blood, hair, or skin - is needed. Next, a method called Polymerase Chain Reaction (PCR) must be used to amplify samples that contain tiny amounts of DNA. As it is difficult to work with such small samples, PCR makes it much easier to work. The enzyme that is used in copying DNA is DNA polymerase, extracted from bacteria (Thermus aquaticus) living in the superheated waters of hot springs. When DNA is heated to about 80 degrees Celsius, the DNA unzips. Since, the enzyme is extracted from an organism that is adapted to such high temperatures, the enzymes are not destroyed and continue to work. The unzipped, single strands act as templates. Primers designed to base-pair with the ends of the DNA strand will be added. The mixture is cooled to about 30 degrees Celsius and this promotes base-pairing between DNA strand and primers. The DNA polymerase recognizes the primers as Start tags and they assemble complementary sequences on the strands. This doubles the number of identical DNA fragments. By repeating this procedure over and over again, a very large DNA sample can be obtained. The next step is to cut the DNA into smaller, more manageable pieces. This is done using special enzymes called restriction enzymes. For example, an enzyme called EcoR1, found in bacteria (Escherichia coli), will cut DNA only when the sequence GAATTC occurs. Cutting DNA with a restrictions enzyme breaks the chromosomes down into millions of differently sized DNA fragments. It is important to select an enzyme that does not cut within any of the VNTR regions that are being studied. For RFLP analysis the enzymes chosen will ideally cut close to the end, on the outside of the tandem repeat region. Once this is done, the DNA fragments are then sorted by size using gel electrophoresis. The DNA is poured into a gel, such as agarose, and an electrical charge is applied to the gel. When an electrical current is applied, one end of the gel takes on a negative charge and the other end takes on a positive charge. DNA has a slightly negative charge (the phosphate groups are negatively charged) and as a result of this, the pieces of DNA will be attracted towards the positively charged part of the gel. The smaller pieces will be able to move more quickly and thus further towards the positive pole than the larger pieces. The different-sized pieces of DNA will therefore be separated by size, with the smaller pieces towards positively charges area at the top and the larger pieces towards the negatively charged area near the bottom of the agarose. Next, DNA pieces need to be transferred to a nylon sheet. This is done by placing the sheet on the gel with the distribution of DNA and soaking them overnight. Adding radioactive or colored probes to the nylon sheet produces a pattern called the DNA fingerprint. Each probe typically sticks in only one or two specific places on the nylon sheet. The final DNA fingerprint is built by using several probes simultaneously. It resembles the bar codes.

Describe the symptoms of a genetic disease and explain the exact cause of it.

One example of a very common genetic disease is the fragile X syndrome. In 1991 it was discovered by a researcher that fragile X syndrome is caused by a mutation in a gene called FMR-1, which is located in the X chromosome. This gene is responsible for instructing the cell to make FMRP, which is a protein that is assumed to be essential to brain functioning. Under normal circumstances all humans have 23 pairs of chromosomes. A person’s sex is decided by the sex chromosomes called X and Y. Normally females have two X chromosome and males have one X and one Y chromosome. If a female inherits one X chromosome with the mutated FMR-1 gene, she will still have a spare X chromosome with the normal gene. However, if a male inherits an X chromosome with the abnormal gene, he will only have an X chromosome with an abnormal gene. Females therefore tend to be less often affected than males, and males are generally more severely affected.

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The mutation that causes fragile X syndrome occurs when a small section of the genetic material within the gene is repeated too many times. Most unaffected people have between six to fifty repeats of the letters CGG in this section. When an individual has between 50 and 200 repeats, the person is a permutation carrier of fragile x syndrome. Carriers are usually not affected by the fragile X syndrome, but they are at a risk of affecting their children. When an individual has more than about 200 repeats, the code is disrupted and the gene shuts down and fails to ...

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