Enzymes work in certain environments just like they work for specific substrates as well. Most enzymes prefer neutral conditions, some prefer acidic or alkaline conditions. Most enzymes work at a certain optimum temperature of 37°C-40°C, this is because that is the body’s optimum temperature. Enzymes are denatured when they reach over 40°C because the enzyme gets more energy and starts to vibrate faster and faster, which causes the bonds to break. As the bond breaks the enzymes shape changes and the substrate no longer fits into the active site. This also may happen when enzymes are at the wrong pH level; therefore the bonds of the enzyme are broken so the enzyme has been denatured.
The Uses Of Enzymes-
Enzymes can be extracted from organisms in a purified form and then used in all sorts of scientific and industrial processes. An everyday use in the home is in biological washing powders. Various protein-digesting enzymes (proteases) are added to the washing powder as these are supposed to dissolve protein stains. Enzymes are also used medically; they are used to detect diseases.
Factors Affecting The Rate Of Reaction-
My aim is to investigate how the concentration of amylase affects its rate of reaction with starch. I found out factors which affects the rate of reaction from secondary resources, they are:
- Temperature
- PH level
- Substrate concentration
- Enzyme concentration
- Enzyme Inhibitors
I am going to base part of my prediction on these variables as they affect the rate of reaction, to do this I will go into them in more detail in my prediction.
As you know from my aim the specific enzyme I will be using in my experiment is amylase. This enzyme breaks down starch into sugar, called maltose. Amylase is in our saliva, which is in the mouth.
Prediction-
To make this prediction I have to consider several variables, which affect the rate of reaction. Enzymes speed up reactions. Several factors affect the rate of enzyme-mediated reactions. Temperature, pH level, the concentrations of molecules involved in the reaction, the concentration of the enzyme itself, and the presence of other molecules, which may activate or inhibit the enzyme, all have an effect on the rate. Some affect reaction whether or not an enzyme is involved. Others are specific to enzyme-mediated reactions.
Temperature-
Enzymes are inactive in the frozen state. Once the solution has melted, rate of reaction increases with temperature until an optimum temperature is reached. Above the optimum temperature, rate quickly decreases. At frozen state the molecules are not able to move around and collide with each other, as there are no vibrations, therefore there is no energy involved. So the substrate molecules cannot react with the enzyme and there is no reaction and not reaction rate. Above melting point, molecules move around randomly in solution. The warmer it gets the faster they move. The faster they move the more likely they are to collide with enzyme molecules so reaction rate increases. Temperature also affects the enzyme itself. As well as moving around in the solution, the polypeptide chain can twist and flex. If the temperature gets too high, the molecule flexes so vigorously that the hydrogen bonds that holds its shape are broken. The enzyme loses its distinctive shape and so then it loses its activity. The enzyme is said to be denatured. This is true for proteins in general, not all enzymes have the same optimum temperature.
Most human enzymes have an optimum temperature of around 40°C. By keeping body temperature at around 37°C, we can ensure the reactions occur at the maximum rate. The enzyme amylase that I am using becomes denatured at 100°C (approximately).
PH Level-
PH is a measure of the hydrogen concentration of a solution. The lower the pH, the more hydrogen there is which is a more acidic solution. The higher the pH, the less hydrogen there is which is more alkaline solution. Most enzymes work fastest at a pH of approximately 7 (neutral condition). PH changes can affect the structure of an enzyme molecule and this affects its ability to bind and react on its substrate.
Substrate Concentration-
The more concentrated the substrate, the quicker the reaction. This is true for chemical reactions in general. In enzyme-mediated reactions, however, there is a second issue. There are a limited number of enzyme molecules available. Each one is occupied for a while each times it binds the substrate and catalyses the reaction. There comes a point when each enzyme molecule is constantly occupied. As soon as one product molecule leaves, another substrate molecule binds. Adding more substrate cannot make the reaction faster. So, overall as substrate concentration increases, rate of reaction increases at first. As concentration rises further, rate levels off at a maximum value.
Enzyme Concentration-
The more enzymes there are, the faster the reaction. More enzyme molecules means more frequent enzyme-substrate collisions, so more product is made in given time. This is the main factor affecting my investigation.
Enzyme Inhibitors-
Inhibitors are molecules, which take no part in a reaction, but make the enzyme less effective. They reduce the rate of reaction. Some inhibitors are a normal part of the working cell. Others are potentially dangerous foreign molecules. Inhibitors are classified as either reversible or irreversible. Irreversible inhibitors bind more or less permanently to same part of the enzyme. The enzyme’s shape is changed, and it loses its activity. Reversible inhibitors are divided into competitive and non-competitive inhibitors, depending on how they bind. Competitive inhibitors bind reversibly to the enzyme’s active site. While the enzyme is bound, the substrate cannot bind. This means that at any one time, a proportion of enzyme molecules are out of action. Rate of reaction is then reduced. Competitive inhibitors are normally very much like the substrate in structure. This is why they can bind to the active site. Non-competitive inhibitors bind to the enzyme somewhere other than the active site. They do not affect substrate binding, but the enzyme becomes a poorer catalyst. Some enzymes affect substrate binding a catalytic ability: mixed inhibition.
Final Prediction-
Looking at all the information I have found on factors affecting the rate of reaction, I can make a final prediction. I predict that when concentration increases, the rate of reaction will increase. If I decrease the concentration, the rate of reaction will decrease. So as the concentration of amylase (enzyme I’m using) increases the rate of reaction will increase. This is because there will be more molecules of the enzyme amylase present therefore this allows the enzyme molecules and substrate molecules to collide more. This is called ‘collision theory’. The collision theory is when particles that move at different speeds collide with each other. In collision theory for a reaction to take place the particles must collide with each other and also the must have sufficient energy for a product to be produced. The orientation of the molecules when they collide matters, they must face the right way when they collide in order for the substrate and enzyme to bind. So as the concentration increases more collisions take place because there is more movement between the enzyme and substrate molecules. When the collisions are in action the substrate molecules will fit into the active site of the enzyme.
So by using all my knowledge I have been able to make a sensible prediction, I have also made this prediction by other work I have done on enzymes in the past. My final prediction is, as I increase concentration of amylase the rate of reaction will increase and if I decrease the concentration of amylase the rate of reaction will decrease. From what I know I can make a quantitative prediction, that amylase with no water and 100% amylase will have the fastest reaction with starch. Below is what I think my graph will look like-
Preliminary Experiment-
In my preliminary experiment I will be reacting different concentrations of amylase with starch, I will be looking out for how long it takes starch to be converted into glucose. So I can see if this reaction is taking place I will be using iodine solution, which acts as an indicator because iodine molecules can fit into the hole in the middle of a starch molecule and this produces the blue/black of iodine-starch mixtures. While choosing the method I was going to use to do my experiment I had to consider a lot of factors. My past work helped my to consider these factors and as a pilot test, I had done an experiment that showed the effect amylase had on starch.
Apparatus-
- Starch solution
- Amylase solution
- Iodine solution
- Stopwatch
- Spotting tile
- Pipette
Amylase breaks down starch into glucose. As the reaction takes place less starch would be present and more glucose would be present. I knew I was expecting a blue/black colour as I put one drop of iodine, which shows that starch has been converted to glucose.
I will make a pilot experiment, which will show if the enzyme amylase breaks down starch. This pilot experiment is known as the spotting tile experiment.
Method (Preliminary Experiment)
- I went and got all the apparatus listed above and safety equipment.
- I cleared and cleaned the spotting tile for any chemicals, which would disturb my experiment.
- Set up my apparatus.
- In a test tube I added 5cm starch and 1cm amylase.
- Every 30 seconds I added the test tube solution and added it to the iodine in the spotting tile.
My Final results were not accurate in this experiment or reliable because there were very small intervals (30 seconds) which didn’t allow me to concentrate on one spot on the tile and then go on to the next, and so I didn’t get proper times on how long it took for the colour to disappear. So I am not going to use this method. I will make a better experiment, which will let me take each result accurately and give me enough time.
Method-
Apparatus-
Below is a list of apparatus I will be using to do my final experiment-
- Test tube rack
- Safety Goggles
- Small labelled beaker containing- (30cm of 1.25% fungus amylase solution)
- 20cm measuring cylinder
- 50cm beaker
- 250cm beaker (plastic water bath)
- Glass rod (stirring)
- Iodine solution (normal-strength)
- Two large boiling tubes
- Thermometer
- Stopwatch
- Water
- 60cm of 1% starch solution
Variables-
The only variable I will be controlling is the concentration of amylase, as I have to investigate in this experiment how concentration of amylase affects the rate of reaction with starch. All the other variables I will be keeping constantly the same. I have to make sure they stay the same throughout the experiment to ensure it is a fair test. The variables I will be keeping the same are the volume of starch, amount of iodine drops and a constant temperature. I have no control what so ever on the pH as the school is providing the amylase, but most enzymes work at neutral conditions (pH 7).
The concentration of amylase will be changed in the experiment; I am going to take six readings on the concentration of amylase (100%, 80%, 60%, 50%, 40% and 20%)
I will measure the variables accurately by measuring all the solutions in a measuring cylinder, as there are more accurate readings. I will look carefully for the measure marks on the measuring cylinder that the measurements are accurate to the correct level. I will stir the two solutions properly in the beaker so that the concentrations mix well.
Fair Test-
- I will read all measurements properly, making sure that it doesn’t affect my results.
- Keep the amount of iodine drops constant, because it can affect the rate of reaction.
- Make sure I keep my temperature constant, because if they are different it can spoil my whole experiment.
- Start the stopwatch on time and stop it on time.
- Make sure all my equipment is working correctly, example- stopwatch
- Stick to correct measurements.
- Repeat the experiment three times so I can get rid of anomalous results.
Safety Precautions-
- Safety goggles should be worn at all times, so nothing goes in my eyes.
- Make sure everything is clearly away from the experiment.
- If any spillages take place wash hands with cold water straight away.
- Make sure the experiment is not on the edge of the table.
- Make sure none of the apparatus is on the edge.
Method (Final Experiment)-
- Clear the workbench and collect all the apparatus.
- Set all the apparatus out on workbench appropriately.
- Wear safety goggles and clear things near the workbench, example- school bag.
- Get my 250cm plastic beaker for my water bath and fill it with 150cm hot water from the kettle.
- I will put the thermometer in the water bath and wait for it to go to 37°C as that is the temperature I am using.
- While I am waiting for that I will start getting my first concentration ready, I will get the correct amount of starch in one test tube, and the correct amount of amylase in one test tube with the dilution already done.
- Then I will put three drops of iodine in my starch test tube.
- When the water bath is 37°C I will put the two test tubes in.
- I will wait for the solutions in the test tube to turn 37°C, when they are I will mix the two test tubes.
- Immediately I will start the stopwatch, and closely observe the test tubes.
- I will wait for the solution to turn colourless and immediately stop the stopwatch when it has.
- Then I will wash and dry all my equipment and continue to do my next concentration.
- Finally I will do the whole entire experiment two more times, so I gain reliable and accurate results.
Dilution Table For Concentration Of Amylase