Enzymes - show how substrate concentration affects the rate of reaction for an enzyme controlled reaction.

Authors Avatar

Biology Coursework: Enzymes                                                         Yahyah Aman 12T                                                                                                                                            

                        Biology Coursework: Enzymes

Aim:

My aim is to show how substrate concentration affects the rate of reaction for an enzyme controlled reaction.

Equation:

                  Catalase

Hydrogen Peroxide (2H O )                               Water (2H O ) + Oxygen (O )

Introduction:

Enzyme is a protein produced by a living organism that acts as a catalyst in a specific reaction by reducing the activation energy. A globular protein, enzymes have a specific three dimensional shape which is determined by the sequence of amino acids. The region which makes the enzyme specific and functional is known to be the active site. As result of this only the substrate which is complementary to the enzyme active site will be able to fit and form an enzyme-substrate complex.

        ACTIVE SITE

            SUBSTRATE

           ENZYME

Enzyme + Substrate

                                       SUBSTRATE FITS INTO ACTIVE SITE OF ENZYME

        ENZYME

Enzyme-Substrate Complex

Lock and Key Theory:

This theory outlines the fact that an enzyme is specific for a substrate. This is shown by using an example of lock and key. This states that as a key is specific in shape it fits into only one lock in order to function. Hence the substrate will only fit into one active site provided by a specific enzyme. As result the shape of the substrate (key) exactly fits the active site of a specific enzyme (lock).

Induced Fit Theory:

This theory suggests that the enzyme doesn’t have to be specific for a complementary substrate as it is stated in the lock and key theory. This theory states that the enzyme is flexible hence has the ability to change its shape in order to allow it to fit the shape of the substrate. Also as the enzyme alters the shape, the enzyme puts on the substrate molecule as result of this it lowers the activation energy.

Activation Energy:

Activation energy is the energy that must be provided to make a reaction take place, enzymes reduce the activation energy required for a substrate to change into a product. This is because enzymes act as a biological catalyst as result of this there are more frequent collisions between particles due to greater kinetic energy hence faster moving particle. As result of more frequent collision there are more enzyme-substrate complex and product produced. So therefore less activation energy is required for a successful collision.

        Activation energy without enzyme.        

Free

Energy

                                                      Activation Energy with enzyme

        Energy level of substrate

        Lower

        activation energy

        Energy level

        of the products

        Time during reaction

Factors that affect enzyme activity:

The factors that affect the enzyme activity and rate of reaction are:

  • Enzyme concentration
  • Substrate concentration
  • Temperature
  • pH
  • Inhibitors

 

Enzyme concentration:

As the enzyme concentration increases there will be more enzymes hence more active sites which can be occupied by the complementary substrate. Hence as result of this there will be a greater probability of an enzyme active site being occupied by the substrate. So therefore more products will be produced in a given time due to the fact that more enzymes lead to a faster rate of reaction. However once the substrate has occupied the active sites then excess enzyme concentration won’t make a difference as they are not going to be occupied as there are enough active sites already to be occupied. Hence the substrate will limit the rate of reaction and as result of this the rate of reaction will remain constant after the point when all substrate has occupied the enzyme active site.

Initial

Rate of

Reaction

                Enzyme concentration

Substrate concentration:

As the substrate concentration increases the rate of reaction increases. This is because a greater number of substrate will mean that there are more chances for a substrate to collide successfully with an enzyme in order to form a product. As result of this there is a greater rate of reaction which means that more products formed in a given time. However this increase in rate of reaction is limited by the enzyme. This is because when all active sites of enzymes are occupied and there is excess substrate then it will not be able to fit in the active site, this point is called V-max. This is because an enzyme active site is available for one complementary substrate at a time. Hence after this point when all enzymes are occupied, the rate of reaction is constant.

Initial

Rate of

Reaction

Temperature:

As the temperature increases, the rate of reaction increases. This is because increase in temperature provides kinetic energy hence particles move faster. As result of faster moving particles there will be more frequent collisions between enzymes and substrate which will lead to form more products in a given time. Every 10°C increase in temperature doubles the rate of reaction. The optimum temperature is 40°C when the rate of reaction is at its peak. This is because greater heat energy provided will mean more energy gained by particles. As result of this particles will move faster due to greater kinetic energy. Hence faster moving particles will collide more frequently and more products formed in a given time.

However after 40°C the rate of reaction decreases. This is due to the fact that the hydrogen bonds which hold the enzyme 3-d structure are broken due to great heat energy provided hence the enzyme shape is distorted. As result of this the active site is not specific for complementary substrate hence no product formed. Therefore the rate of reaction will decrease if there is an increase in temperature after 40°C.

Initial

Rate of

Reaction

            Temperature

pH:

pH is a measure of the concentration of hydrogen ions in a solution. So therefore if the pH decreases, then the concentration of hydrogen ions will increase. Different enzymes work best at particular pH but most work in a fairly neutral condition around pH7. There are also some enzymes which work in an acidic condition such as protease pepsin, which is found in the acidic conditions of the stomach. Enzymes as such have a different optimum pH as certain enzyme work best in specific conditions to carry out a function.

However a change to pH can alter the shape of the enzyme. As result of this the active site I distorted so no substrate can fit into the active site. So therefore pH change alters the shape of the enzyme resulting in the enzyme being denatured as hydrogen and ionic bonds broken. Hence rate of reaction will decrease as there is a change in pH.

Rate

of

Reaction

Inhibitors:

There are two types of inhibitors:

  1. Competitive inhibitor

Competitive inhibitors are inhibitors which form the shape of the substrate that is complementary to the enzyme active site. Hence it binds to the enzyme active site. As result of this the substrate cannot bind to the active site. Therefore this slows the rate of reaction hence it lowers the amount of product produced in a given time. However competitor inhibitor is temporary as it binds to an active site for a period of time and then leaves it hence it is reversible.

        Competitive inhibitor

  Substrate                  Active site           Competitive inhibitor

                                              occupies active site                       Substrate

              temporarily

                   ENZYME

                ENZYME

  1. Non- Competitive inhibitor

Non-competitive inhibitors don’t bind to the enzyme active site as competitive inhibitors do, but the do bind to the allosteric site (anywhere on an enzyme but not the active site) of the enzyme. This alters the shape of the enzyme hence distorting the active site, which means that the complementary substrate cannot bind to the active site. As result of this the product produced in a given time decreases therefore the rate of reaction decreases as result. These types of inhibitors can be permanent for some reaction but also can be temporary hence can be reversed.

        Substrate

        Substrate                                                 Active site distorted hence

         Active site        substrate cannot bind

                    ENZYME

                                                                               Non-competitive inhibitor binds

          Non- competitive inhibitor        to allosteric site

Rate of

Reaction

                     

From all the factors above, my aim is to concentrate on the affect of the substrate concentration on the rate of reaction for an enzyme controlled reaction.

Preliminary:

I carried out a preliminary experiment in order to know how to carry out this experiment. Also I did a preliminary in order to observe the errors which were made due to the equipment used, so I could change the equipment in order to get more accurate and reliable results. The preliminary helped me identify the areas in which errors were made and gave me a chance to improve the method to lower the number of errors. In the preliminary I carried out an experiment which could be used to measure the volume of gas produced, when different concentrations of hydrogen peroxide were catalysed by the enzyme catalase.

Join now!

Errors and Improvements:

First of all, there was an error caused by the measuring cylinder which I used to collect the volume of oxygen. This is mainly because the scale division were as accurate as +/-1 cm³ but I could read as accurate as +/-0.5 cm³. However this scale of +/-0.5 cm³ was still too small to gain an accurate reading. This is because the larger the scale, the lower the percentage error.

For example at the temperature of 20°C after 30 seconds the volume of oxygen I collected was on average 0.85 cm³ (see results ...

This is a preview of the whole essay